What is CBMcarb-DB ?
This database contains the three-dimensional structures of Carbohydrate Binding Modules (CBM) of proteins that have been crystallized with their ligands. The type of proteins, along with the bound Glycan are provided. Links are available to access the information about the original article (Medline), the protein sequence, related structural information (Swissprot, PDB) ....
Browse by CBM Family > Protein Name > PDB
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CBM4
cellobiohydrolase (CbhA,Cthe_0413)
3K4Z-CBM4
endo-b-1,4-glucanase C (CenC)
1GU3-CBM4
xylanase (Xynl,Xyn1,RmXyn10A,Rmar_1069)
2Y64-CBM4
2Y6G-CBM4
2Y6K-CBM4
2Y6L-CBM4
4BJ0-CBM4
5DPN-CBM4
CBM6
b-1,3-glucanase / laminarinase (BhGH81,BH0236
1W9T-CBM6
1W9W-CBM6
b-galactosidase (Gal59A,Ccel_1238)
2V4V-CBM6
endo-b-1,4-glucanase B (CelB)
1UYO-CBM6
1UYX-CBM6
1UYY-CBM6
1UZ0-CBM6
endo-b-agarase I / B (AgaB,Sde_1175)
2CDO-CBM6
2CDP-CBM6
xylanase (M6,CtM6,CtXyl5A,Cthe_2193) (arabino
5LA0-CBM6
5LA1-CBM6
5LA2-CBM6
xylanase A (XynA)
1O8S-CBM6
1OD3-CBM6
1UY2-CBM6
1UY3-CBM6
1UY4-CBM6
xylanase A or U / acetylxylan esterase (XynA,
1UX-CBM6
CBM9
xylanase A (XynA,Tm0061)
1I82-CBM9
CBM11
bifunctional endo-b-1,4-glucanase / b-1,4-xyl
6R31-CBM11
6R3M-CBM11
CBM12
chitinase (Chi45,CvChi45,CV2935)
4TX8-CBM12
CBM13
29-kDa galactose-binding lectin (R-type) (EW2
2ZQN-CBM13
2ZQO-CBM13
actinohivin (Ath)
4DEN-CBM13
4END-CBM13
4G1R-CBM13
4P6A-CBM13
agglutinin (AAG)
2Q3N-CBM13
agglutinin (MOA)
2IHO-CBM13
3EF2-CBM13
5D61-CBM13
5MU9-CBM13
agglutinin (RCA)
1RZO-CBM13
agglutinin (RSA) (partial)
4G9N-CBM13
b-1,4-xylanase (XynA,FXYN,SoXyn10A) (partial)
1ISV-CBM13
1ISW-CBM13
1ISX-CBM13
1ISY-CBM13
1ISZ-CBM13
1IT0-CBM13
1V6U-CBM13
1V6V-CBM13
1V6W-CBM13
1V6X-CBM13
2D24-CBM13
5GQE-CBM13
b-mannanase A (ManA,CelA)
3OEA-CBM16
ebulin 1 / ebulin blo / type 2 ribosome-inact
1HWM-CBM13
1HWN-CBM13
1HWO-CBM13
1HWP-CBM13
galactose-binding type2 ribosome-inactivating
4Z9W-CBM13
4ZBV-CBM13
4ZFU-CBM13
4ZFW-CBM13
4ZFY-CBM13
4ZGR-CBM13
4ZLB-CBM13
glucoamylase P (GamP)
6IFB-CBM13
Ha33 (HA-33,Ha34)
4LO1-CBM13
4LO2-CBM13
4LO3-CBM13
5BP5-CBM13
5BQU-CBM13
hemolysin/cytolysin b-trefoil lectin (VV20404
4OWK-CBM13
4OWL-CBM13
hemolytic lectin (Cel3,CEL-III)
2Z48-CBM13
2Z49-CBM13
3W9T-CBM1
lectin (MPL)
4IYB-CBM13
4IZX-CBM13
4J2S-CBM13
lectin (Psl1a)
3PHZ-CBM13
5MUA-CBM13
lectin (SGSL)
4HR6-CBM13
5Y42-CBM13
5Y97-CBM13-1
5Y97-CBM13-2
lectin I (ML-I)
1OQL-CBM13
2R9K-CBM13
neurotoxin type B progenitor toxin complex su
4OUJ-CBM13
ribosome-inactivating protein
1PC8_CBM13
1YF8-CBM13
ribosome-inactivating protein (AVl)
3CA1-CBM13
3CA3-CBM13
3CA4-CBM13
3CA5-CBM13
3CAH-CBM13
Ricin
7KD0-CBM13
ricin B-chain (RTB)
2AAI-CBM13
3RTI-1-CBM13
3RTI-2-CBM13
3RTJ-1-CBM13
3RTJ-2-CBM13
toxin (Ha1,Ha-33)
3AJ5-CBM13
toxin (Ha1,Ha-33,Antp-33)
3AH1-CBM13
UDP-GalNAc:N-acetylgalactosGTGalNT10 ,ppGalNA
2D7R-CBM13
UDP-GalNAc:polypeptide a-N-acetylgalactosamin
5AJN-CBM13
5NQA-CBM13
xylanase A (XlnA)
1KNM-CBM13
1MC9-CBM13
[arabinogalactan] exo-b-1,3-galactanase (Ct1,
3VSZ-CBM13
3VT0-CBM13
3VT1-CBM13
3VT2-CBM13
CBM14
avirulence protein (Avr4,Cf-Avr4)
6BN0-CBM14
laminarinase (Lam,TmLam,TM0024)
1GUI-CBM14
CBM15
xylanase F / 10C (Xyl10C,CJA_3066)
1GNY-CBM15
1US2-CBM15
CBM16
b-mannanase A (ManA,CelA)
2ZEX-CBM16
2ZEY-CBM16
3OEB-CBM16
xylanase A (XynA)
1NAE-CBM6
CBM17
endo-b-1,4-glucanase 5A (EngF)
1J84-CBM17
CBM18
agglutinin 1 (WGA1)
1WGC-CBM18
2UVO-CBM18
2X3T-CBM18
4AML-CBM18
agglutinin 2 (WGA2)
2WGC-CBM18
agglutinin 3 (WGA3)
1K7T-CBM18
1K7Y-CBM18
2X52-CBM18
antimicrobial peptide (Ac-AMP2,Acamp2)
1ZNT-CBM18
chitinase / agglutinin isolectin I (Uda1,UDA)
1EN2-CBM18
1ENM-CBM18
hevein (major) (Hev1)
1T0W-CBM18
lectin-D1/D2 (PL-D2) (partial)
1ULM-CBM18
CBM19
xylanase A (XynA,Tm0061)
1I8A-CBM19
CBM20
a/b-cyclodextrin glucanotransferase (AmyA)
3BMW-CBM20
b-amylase (SpoII)
1B9Z-CBM20
1ITC-CBM20
1J18-CBM20
1VEM-CBM20
1VEO-CBM20
1VEP-CBM20
b-cyclodextrin glucanotransferase (Cgt)
1CDG-CBM20
1CGV-CBM20
1CGW-CBM20
1CGY-CBM20
1CXE-CBM20
1CXF-CBM20
1CXH-CBM20
1CXI-CBM20
1CXK-CBM20
1CXL-CBM20
1D3C-CBM20
1DED-CBM20
1DTU-CBM20
1EO5-CBM20
1EO7-CBM20
1KCL-CBM20
1OT1-CBM20
1OT2-CBM20
1PEZ-CBM20
1PJ9-CBM20
1V3M-CBM20
2CXG-CBM20
2DIJ-CBM20
b-cyclodextrin glucanotransferase (CGTase)
5CGT-CBM20
b-mannanase (ManA,CsMan26)
1PMH-CBM27
glucoamylase P (GamP)
6FHW-CBM20
laforin / Hs-laforin (Epm2a)
4RKK-CBM20
maltogenic a-amylase (BSuA,Novamyl)
1QHO-CBM20
1QHP-CBM20
non-catalytic protein 1 (Ncp1)
1GWL-CBM29
CBM21
glucoamylase (AmyA)
4BFN-CBM21
4BFO-CBM21
glucoamylase A (AmyA)
2V8L-CBM21
2V8M-CBM21
CBM22
xylanase C / 10 C (XynC,X-K)
4XUQ-CBM22
4XUR-CBM22
4XUT-CBM22
CBM25
a-amylase G-6 (BH0413)
2C3W-CBM25
2C3X-CBM25
CBM27
b-mannanase (ManB,TM1227)
1OF4-CBM27
1OH4-CBM27
CBM28
a-amylase G-6 (BH0413)
2C3H-CBM26
endo-b-1,4-glucanase 5A (CelA)
3ACG-CBM28A
3ACG-CBM28B
3ACH-CBM28A
3ACH-CBM28B
3ACI-CBM28A
3ACI-CBM28B
CNM29
non-catalytic protein 1 (Ncp1)
1GWM-CNM29
CBM29
1OH3-CBM29
CBM32
a-N-acetylglucosaminidase (AgnC,CpGH89,CPF_08
4A41-CBM32
4A45-CBM32
4A6O-CBM32
4AAX-CBM32
alginate lyase (AlyQ)
7D2A-CBM32
b-N-acetylglucosaminidase (NagJ,CpNagJ,CPE123
2J7M-CBM32
chitosanase-glucanase
4ZZ8-CBM32
CPF_1301
4LKS-CBM32
4P5Y-CBM32
CPF_1489
7JNB-CBM32
7JNF-CBM32
exo-a-sialidase (NanJ,CPE0553)
2V72-CBM32
exo-b-N-acetylglucosaminidase (NagH,CpGH84A,C
2W1U-CBM32
2WDB-CBM32
hyaluronidase (NagJ,CpNagJ,CpOGA,CPF_1442)
2J1A-CBM32
2J1E-CBM32
non-catalytic protein 1 (Ncp1)
1W8T-CBM29
1W8U-CBM29
sialidase (NedA)
1EUU-CBM32
1W8N-CBM32
1W8O-CBM32
2BZD-CBM32
CBM33
ribosome-inactivating protein
1TFM-CBM33
CBM34
a-amylase I (TVA I)
1UH2-CBM34
1UH3-CBM34
1UH4-CBM34A
1UH4-CBM34B
2D0F-CBM34
2D0G-CBM34
cyclomaltodextrinase / maltogenic a-amylase (
1GVI-CBM34
cyclomaltodextrinase / neopullulanase
1G1Y-CBM34
CBM35
6-a-glucosyltransferase (Ps6GT31A)
5X7P-CBM35
5X7Q-CBM35A
5X7Q-CBM35B
5X7Q-CBM35C
5X7R-CBM35
cycloalternan-forming enzyme / 3-a-isomaltosy
5HPO-CBM35
5HXM-CBM35
5I0D-CBM35
cycloalternan-forming enzyme/3-a-isomaltosylT
4KWU-CBM35
cycloalternan-forming enzyme/3-a-isomaltosylt
5F7U-CBM35
cycloisomaltooligos glucanotransferase (CITas
3WNL_CBM35
3WNM-CBM35A
3WNN-CBM35B
3WNO-CBM35
cycloisomaltooligosaccharide glucanotransfera
5X7H-CBM35
exo-b-1,3-galactanase (Pc1,3Gal43A)
7BYT-CBM35
7BYV-CBM35
exo-b-glucosaminidase / exochitosanase (CsxA)
2VZQ-CBM35
2VZR-CBM35
glucuronoxylan-specific xylanase
4QB2-CBM35
4QB6-CBM35
isomalto-dextranase (G2d,Imd)
5AWP-CBM35
5AWQ-CBM35
rhamnogalacturonan acetylesterase 12A (Cthe_3
2W47-CBM35
xylanase B /10B (XynB,XylB,CJA_3280)
2W87-CBM35
CBM36
a-L-arabinofuranosidase 43A (XynD)
1UX7-CBM36
CBM39
b-1,3-glucan recognition protein (betaGRP,Gnb
3AQX-CBM39
b-1,3-glucan recognition protein (BGBP,Gnbp3)
3AQZ-CBM39
CBM40
anhydrosialidase (RgNanH,HMPREF1201_01421) (i
6ER3-CBM40
6ER4-CBM40
exo-a-sialidase (NanJ,CPE0553)
2V73-CBM40
neuraminidase (NanC)
4YW1-CBM40
4YW2-CBM40
4YW3-CBM40
4YZ4-CBM40
4YZ5-CBM40
5F9T-CBM40
sialidase (CpNanI,CPF_0721)
5FRA-CBM40
5FRE-CBM40
sialidase / neuraminidase (NanH,VcNA,VCSA)
1W0O-CBM40
1W0P-CBM40
2W68-CBM40
sialidase A (NanA)
4C1W-CBM40
4C1X-CBM40
CBM41
C3F39_10140
5YND-CBM41
glycogen-degrading enzyme (SpuA,PulA,SP0268)
2J44-CBM41-1
2J44-CBM41-2
2YA1-CBM41
pullulanase A (PulA)
2FHC-CBM41
2FHF-CBM41
CBM42
a-L-arabinofuranosidase B (AbfB,AkAbfB)
1WD4-CBM42
2D43-CBM42
2D44-CBM42
exo-a-1,5-L-arabinofuranosidase (SaAraf43A,SA
3AKG-CBM42
3AKH-CBM42
3AKI-CBM42
pullulanase (PulA,Tm1845)
2J72-CBM41
CBM43
2J73-CBM41
CBM47
endo-b-1,4-galactosidase (SP_2159,SP2159,Sp4G
2J1S-CBM47
2J1T-CBM47
2J1U-CBM47
2J1V-CBM47
F-lectin (FBP32,MsaFBP32,MS-FBP32)
3CQO-CBM47
fucolectin
1K12-CBM47
lectinolysin (Lly)
3LEG-CBM47
3LEI-CBM47
3LEK-CBM47
lectinolysin / human platelet aggregation fac
4GWI-CBM47
4GWJ-CBM47
CBM48
5'-AMP-activated protein kinase, b-subunit (P
1Z0M-CBM48
1Z0N-CBM48
a-1,4-glucan branching enzyme (GlgB,BE1,cceBE
5GQV-CBM48
AMP-activated protein kinase beta 2 non-catal
4RER-CBM48
branching-enzyme (Gbe1,HosBE)
5CLT-CBM48
5CLW-CBM48
glycogen-degrading enzyme (SpuA,PulA,SP0268)
2YA1-CBM48
malto-oligosyltrehalose trehalohydrolase (DR0
2BHY-CBM48
starch-branching enzyme 1 (Sbe1,Rbe1,BEI,OsBE
3VU2-CBM48
type I pullulanase (PulA)
3WDI-CBM48A
3WDI-CBM48B
3WDJ-CBM48A
3WDJ-CBM48B
xylanase (M6,CtM6,CtXyl5A,Cthe_2193) (arabino
2YB7-CBM62
CBM50
BSU14040 (YkuD)
2MTZ-CBM50
chitin elicitor binding protein (CEBiP,OsCEBi
5JCE-CBM50
D,L-endopeptidase (NlpC/P60,P60_tth,TTHA0266)
4UZ3-CBM50
Immunoglobulin G binding protein, partial (Sp
6KRV-CBM50
lectin (MGG_03307)
5C8P-CBM50
5C8Q-CBM50
LysM effector (MYCGRDRAFT_105487)
6Q40-CBM50
LysM effector / extracellular protein 6 (Ecp6
4B8V-CBM50
4B9H-CBM50
CBM51
a-1,2-L-fucosidase (Afc3,CPF_2129)
2VMG-CBM51
blood group A- and B-cleaving endo-b-galactos
2VNG-CBM51
2VNO-CBM51
CBM57
malectin (Mlec-b,Mgc80075,LOC432306)
2K46-CBM57
CBM58
a-amylase / neopullulanase (SusG,BT3698,BT_36
3K8M-CBM58
6BS6-CBM58
malectin (Mlec-b,Mgc80075,LOC432306)
2KR2-CBM57
CBM60
vCBM60 (Cbm60)
2XFD-CBM60
2XFE-CBM60
CBM61
endo-b-1,4-galactanase (TM1201,Tmari_1208)
2XOM-CBM61
2XON-CBM61
CBM62
endo-b-1,4-galactosidase (CGSSp3BS71,Sp3GH98,
2YGM-CBM51
xylanase (M6,CtM6,CtXyl5A,Cthe_2193) (arabino
2YFZ-CBM62
2YG0-CBM62
CBM63
bifunctional cellulase / expansin (CelA,pCM1_
4JCW-CBM63
4L48-CBM63
expansin (Exlx1,BsEXLX1,YoaJ,ExpA,BSU18630)
4FER-CBM63
4FFT-CBM63
4FG2-CBM63
4FG4-CBM63
CBM65
endoglucanase (EcCel5A)
2YPJ-CBM65
4AFD-CBM65
5AFE-CBM65
CBM66
levanase (SacC,BSU27030)
4B1L-CBM66
4B1M-CBM66
CBM67
a-L-rhamnosidase (SaRha78A,sav_828,SAV828)
3W5N-CBM67
Pleurotus Ostreatus Lectin (POL)
6KC2-CBM67
6LI7-CBM67
6LIK-CBM67
6T1D-CBM67
CBM80
glucomannanase (RfGH5-1/2)
5FU2-CBM80
5FU3-CBM74
5FU4-CBM74
CBM81
cellulase (CelE1)
5KLE-CBM81
5KLF-CBM81
CBM86
a-L-arabinofuranosidase B (AbfB,AkAbfB)
6SXR-CBM42
endo-b-1,4-xylanase (RiXyn10A,RiGH10A,ROSINTL
6SGF-CBM86
What are CBMs ?
CBMs can be defined as discrete auxiliary protein modules with a non-catalytic carbohydrate binding function. CBMs are typically associated to modular enzymes but can also be found isolated from a polypeptide chain or associated to other non-enzymatic proteins. Some lectins and LysM domains are also classified as CBMs. CBMs have been grouped into families based on amino acid sequence similarities. These modules show a highly diverse range of carbohydrate binding specificities and exert critical functions in enhancing enzyme catalytic efficiency (e.g. substrate targeting), as carbohydrate sensing domains or as adhesion molecules (e.g. mediating bacterial adhesion to host cell surface). CBMs are also used in different biotechnological applications.